Welcome to CoFI’s documentation!#
CoFI (Common Framework for Inference) is an open-source initiative for interfacing between generic inference algorithms and specific geoscience problems.
This project is led by InLab.
graph TD;
cofi(CoFI - Common Framework for Inference):::cls_cofi;
parameter_estimation(Parameter estimation):::cls_parameter_estimation;
linear(Matrix based solvers):::cls_parameter_estimation;
non_linear(Optimization):::cls_parameter_estimation;
linear_system_solvers(Linear system solvers):::cls_parameter_estimation;
linear_solverlist(scipy.linalg.lstsq <br>...):::cls_solvers;
optimization(Non linear):::cls_parameter_estimation;
optimization2(Linear):::cls_parameter_estimation;
opt_solverlist(scipy.optimize.minimize <br> torch.optim <br> ROL <br>...):::cls_solvers;
ensemble_methods(Ensemble methods):::cls_ensemble_methods;
direct_search(Direct Search):::cls_ensemble_methods;
amc(Monte Carlo):::cls_ensemble_methods;
amc_solverlist(Neighbourhood Algorithm <br> Bayesian Optimization <br> Slime mold algorithm <br> Border Collie Optimization <br> ...):::cls_solvers;
ng(Deterministic):::cls_ensemble_methods;
ng_solverlist(Nested grids <br> Hilbert Curves<br>...):::cls_solvers;
bs(Bayesian Sampling):::cls_ensemble_methods;
mcmc(McMC samplers):::cls_ensemble_methods;
mcmc_solverlist(Basic metropolis<br>Affine Invariance sampler<br>emcee <br> pyMC <br> ...):::cls_solvers;
rjmcmc(Trans-D McMC):::cls_ensemble_methods;
rjmcmc_solverlist(Basic Trans-D <br> BayesBay <br> RJ-mcmc):::cls_solvers;
cofi --> parameter_estimation;
parameter_estimation --> linear;
linear --> linear_system_solvers;
linear_system_solvers -.- linear_solverlist;
parameter_estimation --> non_linear;
non_linear --> optimization;
non_linear --> optimization2;
optimization -.- opt_solverlist;
optimization2 -.- opt_solverlist;
cofi --> ensemble_methods;
ensemble_methods --> direct_search;
direct_search --> amc;
amc -.- amc_solverlist;
direct_search --> ng;
ng -.- ng_solverlist;
ensemble_methods --> bs;
bs --> mcmc;
mcmc -.- mcmc_solverlist;
bs --> rjmcmc;
rjmcmc -.- rjmcmc_solverlist;
classDef cls_cofi fill: #d4a373, stroke-width:0;
classDef cls_parameter_estimation fill: #ccd5ae, stroke-width:0;
classDef cls_ensemble_methods fill: #e9edc9, stroke-width:0;
classDef cls_solvers fill: #faedcd, stroke-width:0;